The name GAT stands for Genetic Analysis Toolpack and we are aiming to make it a useful molecular data analysis tool, and more importantly it is an opensource software with a proper GUI and a thorough tutorial as well as sample data.
GAT V 1.0 has the following functionalities:
1- reverse complementation
2- Reverse transcription
3- Mono-nucleotide frequency as well as its statistical analysis using Chi-square, plus a graphical representation using Matplotlib library.
4- Di-nucleotide frequency table as well as a table of the expected frequencies of the Di-nucleotides , plus a graphical representation using Matplotlib library.
5- Codon frequency table generation for codon usage bias analysis.
6- Codon optimisation for E.coli K12 genome
GAT has been developed using Python3.6 in Linux Ubuntu and it is currently available as an exe extension for Windows.
You can download it from the link below:
Project development web-page link:
